feat(#44): Add verification script and complete documentation
- Created verify_sample_relationships.py script to validate implementation - Updated ISSUE44_PLAN.md marking completed tasks - Created ISSUE44_IMPLEMENTATION.md with complete summary - Script verifies: - Analyses have sample type assignments - Sample types are properly configured - Stock.lot samples use new fields correctly - Field synchronization works properly All tasks for Issue #44 completed successfully. 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude <noreply@anthropic.com>
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documents/ISSUE44_IMPLEMENTATION.md
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documents/ISSUE44_IMPLEMENTATION.md
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# Issue #44 Implementation Summary
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## Overview
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This document summarizes the implementation of Issue #44: Adding relationships between analyses and sample types in the LIMS module.
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## Changes Implemented
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### 1. Model Updates
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#### ProductTemplate (`lims_management/models/product.py`)
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- Added `required_sample_type_id` (Many2one): Links analysis to required sample type
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- Added `sample_volume_ml` (Float): Specifies required sample volume in ml
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- Added validation constraints to ensure fields are only used for analysis products
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#### StockLot (`lims_management/models/stock_lot.py`)
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- Added `sample_type_product_id` (Many2one): References the sample type product
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- Kept `container_type` field for backward compatibility (marked as legacy)
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- Added `@api.onchange` method to synchronize both fields
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- Added `get_container_name()` method to retrieve container name from either field
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### 2. View Updates
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#### Product Views (`lims_management/views/analysis_views.xml`)
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- Added sample type fields to analysis configuration page
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- Created list views showing test-sample relationships
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- Added `is_sample_type` field to product form
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#### Stock Lot Views (`lims_management/views/stock_lot_views.xml`)
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- Added `sample_type_product_id` to both list and form views
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- Made `container_type` optional and conditionally visible
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- Proper readonly states based on workflow
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### 3. Data Files
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#### Initial Data (`lims_management/data/sample_types.xml`)
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Created 10 common laboratory sample types:
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- Serum Tube (Red Cap)
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- EDTA Tube (Purple Cap)
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- Citrate Tube (Blue Cap)
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- Heparin Tube (Green Cap)
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- Glucose Tube (Gray Cap)
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- Urine Container
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- Stool Container
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- Swab
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- Blood Culture Bottle
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- CSF Tube
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#### Demo Data Updates
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- Updated all demo analyses with sample type requirements and volumes
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- Updated demo samples to use the new `sample_type_product_id` field
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- Added complete test-sample mappings
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### 4. Verification Tools
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Created `verify_sample_relationships.py` script that checks:
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- Analyses with proper sample type assignments
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- Available sample types and their usage
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- Laboratory samples field synchronization
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- Data integrity and consistency
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## Usage
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### For Developers
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1. When creating a new analysis product:
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- Set `is_analysis = True`
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- Select the appropriate `required_sample_type_id`
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- Specify `sample_volume_ml` if needed
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2. When creating a laboratory sample (stock.lot):
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- Use `sample_type_product_id` to select the sample type
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- The legacy `container_type` field will auto-synchronize
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### For Users
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1. Analysis products now show their required sample type
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2. When viewing samples, the sample type is clearly displayed
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3. The system maintains backward compatibility with existing data
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## Benefits
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1. **Automation Ready**: Foundation for automatic sample generation (Issue #32)
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2. **Data Integrity**: Clear relationships between tests and samples
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3. **User Clarity**: Users know exactly which container to use for each test
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4. **Grouping Capability**: Can group analyses requiring the same sample type
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5. **Backward Compatible**: Existing data continues to work
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## Testing
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Run the verification script to check implementation:
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```bash
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docker cp verify_sample_relationships.py lims_odoo:/tmp/
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docker exec lims_odoo python3 /tmp/verify_sample_relationships.py
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```
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## Next Steps
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With this foundation in place, Issue #32 (automatic sample generation) can now be implemented by:
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1. Reading the `required_sample_type_id` from ordered analyses
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2. Grouping analyses by sample type
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3. Creating appropriate `stock.lot` records with correct `sample_type_product_id`
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@ -20,7 +20,7 @@ Establecer una relación entre los productos tipo análisis (tests) y los tipos
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### 1. Modificar el modelo ProductTemplate
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### 1. Modificar el modelo ProductTemplate
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- **Archivo:** `lims_management/models/product.py`
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- **Archivo:** `lims_management/models/product.py`
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- **Tareas:**
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- **Tareas:**
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- [ ] Agregar campo `required_sample_type_id`:
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- [x] Agregar campo `required_sample_type_id`:
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```python
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```python
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required_sample_type_id = fields.Many2one(
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required_sample_type_id = fields.Many2one(
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'product.template',
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'product.template',
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@ -29,8 +29,8 @@ Establecer una relación entre los productos tipo análisis (tests) y los tipos
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help="Tipo de muestra/contenedor requerido para realizar este análisis"
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help="Tipo de muestra/contenedor requerido para realizar este análisis"
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)
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)
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```
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```
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- [ ] Agregar validación para asegurar que solo se puede asignar a productos con `is_analysis=True`
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- [x] Agregar validación para asegurar que solo se puede asignar a productos con `is_analysis=True`
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- [ ] Considerar agregar campo `sample_volume_ml` para indicar volumen requerido
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- [x] Considerar agregar campo `sample_volume_ml` para indicar volumen requerido
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### 2. Actualizar el modelo StockLot
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### 2. Actualizar el modelo StockLot
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- **Archivo:** `lims_management/models/stock_lot.py`
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- **Archivo:** `lims_management/models/stock_lot.py`
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verify_sample_relationships.py
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#!/usr/bin/env python3
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"""
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Verification script for test-sample relationships in LIMS
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This script checks that the relationships between analyses and sample types
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are correctly configured after Issue #44 implementation.
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"""
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import odoo
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import json
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from datetime import datetime
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def verify_sample_relationships(cr):
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"""Verify that analyses have proper sample type relationships"""
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env = odoo.api.Environment(cr, odoo.SUPERUSER_ID, {})
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print("\n" + "="*60)
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print("LIMS TEST-SAMPLE RELATIONSHIPS VERIFICATION")
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print("="*60)
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print(f"Execution time: {datetime.now()}")
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print("="*60 + "\n")
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# 1. Check analyses with sample types
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print("1. ANALYSES WITH SAMPLE TYPE REQUIREMENTS:")
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print("-" * 60)
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analyses = env['product.template'].search([('is_analysis', '=', True)])
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if not analyses:
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print("WARNING: No analyses found in the system!")
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return
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missing_sample_type = []
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for analysis in analyses:
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if analysis.required_sample_type_id:
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print(f"✓ {analysis.name}")
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print(f" → Sample Type: {analysis.required_sample_type_id.name}")
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print(f" → Volume Required: {analysis.sample_volume_ml} ml")
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else:
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missing_sample_type.append(analysis.name)
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print(f"✗ {analysis.name} - NO SAMPLE TYPE ASSIGNED")
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print(f"\nTotal analyses: {len(analyses)}")
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print(f"With sample type: {len(analyses) - len(missing_sample_type)}")
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print(f"Missing sample type: {len(missing_sample_type)}")
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# 2. Check available sample types
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print("\n2. AVAILABLE SAMPLE TYPES:")
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print("-" * 60)
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sample_types = env['product.template'].search([('is_sample_type', '=', True)])
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if not sample_types:
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print("WARNING: No sample types found in the system!")
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return
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for sample_type in sample_types:
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# Count how many analyses use this sample type
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usage_count = env['product.template'].search_count([
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('is_analysis', '=', True),
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('required_sample_type_id', '=', sample_type.id)
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])
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print(f"• {sample_type.name} - Used by {usage_count} analyses")
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print(f"\nTotal sample types: {len(sample_types)}")
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# 3. Check stock.lot samples
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print("\n3. LABORATORY SAMPLES (stock.lot):")
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print("-" * 60)
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lab_samples = env['stock.lot'].search([('is_lab_sample', '=', True)])
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if not lab_samples:
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print("No laboratory samples found in stock.lot")
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return
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sync_issues = []
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for sample in lab_samples:
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has_new_field = bool(sample.sample_type_product_id)
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has_legacy_field = bool(sample.container_type)
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print(f"\n{sample.name}:")
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print(f" Patient: {sample.patient_id.name if sample.patient_id else 'None'}")
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print(f" State: {sample.state}")
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if has_new_field:
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print(f" ✓ Sample Type Product: {sample.sample_type_product_id.name}")
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else:
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print(f" ✗ Sample Type Product: NOT SET")
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if has_legacy_field:
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print(f" Legacy Container Type: {sample.container_type}")
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# Check synchronization
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if has_new_field and has_legacy_field:
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expected_type = _get_expected_container_type(sample.sample_type_product_id.name)
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if expected_type != sample.container_type:
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sync_issues.append((sample.name, expected_type, sample.container_type))
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print(f"\nTotal lab samples: {len(lab_samples)}")
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print(f"With new sample_type_product_id: {len([s for s in lab_samples if s.sample_type_product_id])}")
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print(f"Synchronization issues: {len(sync_issues)}")
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if sync_issues:
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print("\nSYNCHRONIZATION ISSUES FOUND:")
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for name, expected, actual in sync_issues:
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print(f" {name}: Expected '{expected}', got '{actual}'")
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# 4. Summary and recommendations
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print("\n" + "="*60)
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print("SUMMARY:")
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print("="*60)
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if missing_sample_type:
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print("\n⚠️ ATTENTION REQUIRED:")
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print(f" - {len(missing_sample_type)} analyses need sample type assignment")
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print(" - Affected analyses:", ', '.join(missing_sample_type))
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if sync_issues:
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print(f" - {len(sync_issues)} samples have field synchronization issues")
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if not missing_sample_type and not sync_issues:
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print("\n✅ All test-sample relationships are properly configured!")
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print("\n" + "="*60)
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def _get_expected_container_type(product_name):
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"""Map product name to expected legacy container type"""
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name_lower = product_name.lower()
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if 'suero' in name_lower or 'serum' in name_lower:
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return 'serum_tube'
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elif 'edta' in name_lower:
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return 'edta_tube'
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elif 'hisopo' in name_lower or 'swab' in name_lower:
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return 'swab'
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elif 'orina' in name_lower or 'urine' in name_lower:
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return 'urine'
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else:
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return 'other'
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if __name__ == '__main__':
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db_name = 'lims_demo'
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try:
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registry = odoo.registry(db_name)
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with registry.cursor() as cr:
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verify_sample_relationships(cr)
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except Exception as e:
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print(f"ERROR: {str(e)}")
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print("\nMake sure:")
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print("1. The Odoo instance is running")
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print("2. The database 'lims_demo' exists")
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print("3. The LIMS module is installed")
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