From f833595e4c322ac68269b3aa916a650688e3e852 Mon Sep 17 00:00:00 2001 From: Luis Ernesto Portillo Zaldivar Date: Mon, 14 Jul 2025 21:09:34 -0600 Subject: [PATCH] feat(#44): Add verification script and complete documentation MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - Created verify_sample_relationships.py script to validate implementation - Updated ISSUE44_PLAN.md marking completed tasks - Created ISSUE44_IMPLEMENTATION.md with complete summary - Script verifies: - Analyses have sample type assignments - Sample types are properly configured - Stock.lot samples use new fields correctly - Field synchronization works properly All tasks for Issue #44 completed successfully. 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude --- documents/ISSUE44_IMPLEMENTATION.md | 99 ++++++++++++++++++ documents/plans/ISSUE44_PLAN.md | 6 +- verify_sample_relationships.py | 153 ++++++++++++++++++++++++++++ 3 files changed, 255 insertions(+), 3 deletions(-) create mode 100644 documents/ISSUE44_IMPLEMENTATION.md create mode 100644 verify_sample_relationships.py diff --git a/documents/ISSUE44_IMPLEMENTATION.md b/documents/ISSUE44_IMPLEMENTATION.md new file mode 100644 index 0000000..229c3ab --- /dev/null +++ b/documents/ISSUE44_IMPLEMENTATION.md @@ -0,0 +1,99 @@ +# Issue #44 Implementation Summary + +## Overview +This document summarizes the implementation of Issue #44: Adding relationships between analyses and sample types in the LIMS module. + +## Changes Implemented + +### 1. Model Updates + +#### ProductTemplate (`lims_management/models/product.py`) +- Added `required_sample_type_id` (Many2one): Links analysis to required sample type +- Added `sample_volume_ml` (Float): Specifies required sample volume in ml +- Added validation constraints to ensure fields are only used for analysis products + +#### StockLot (`lims_management/models/stock_lot.py`) +- Added `sample_type_product_id` (Many2one): References the sample type product +- Kept `container_type` field for backward compatibility (marked as legacy) +- Added `@api.onchange` method to synchronize both fields +- Added `get_container_name()` method to retrieve container name from either field + +### 2. View Updates + +#### Product Views (`lims_management/views/analysis_views.xml`) +- Added sample type fields to analysis configuration page +- Created list views showing test-sample relationships +- Added `is_sample_type` field to product form + +#### Stock Lot Views (`lims_management/views/stock_lot_views.xml`) +- Added `sample_type_product_id` to both list and form views +- Made `container_type` optional and conditionally visible +- Proper readonly states based on workflow + +### 3. Data Files + +#### Initial Data (`lims_management/data/sample_types.xml`) +Created 10 common laboratory sample types: +- Serum Tube (Red Cap) +- EDTA Tube (Purple Cap) +- Citrate Tube (Blue Cap) +- Heparin Tube (Green Cap) +- Glucose Tube (Gray Cap) +- Urine Container +- Stool Container +- Swab +- Blood Culture Bottle +- CSF Tube + +#### Demo Data Updates +- Updated all demo analyses with sample type requirements and volumes +- Updated demo samples to use the new `sample_type_product_id` field +- Added complete test-sample mappings + +### 4. Verification Tools + +Created `verify_sample_relationships.py` script that checks: +- Analyses with proper sample type assignments +- Available sample types and their usage +- Laboratory samples field synchronization +- Data integrity and consistency + +## Usage + +### For Developers +1. When creating a new analysis product: + - Set `is_analysis = True` + - Select the appropriate `required_sample_type_id` + - Specify `sample_volume_ml` if needed + +2. When creating a laboratory sample (stock.lot): + - Use `sample_type_product_id` to select the sample type + - The legacy `container_type` field will auto-synchronize + +### For Users +1. Analysis products now show their required sample type +2. When viewing samples, the sample type is clearly displayed +3. The system maintains backward compatibility with existing data + +## Benefits + +1. **Automation Ready**: Foundation for automatic sample generation (Issue #32) +2. **Data Integrity**: Clear relationships between tests and samples +3. **User Clarity**: Users know exactly which container to use for each test +4. **Grouping Capability**: Can group analyses requiring the same sample type +5. **Backward Compatible**: Existing data continues to work + +## Testing + +Run the verification script to check implementation: +```bash +docker cp verify_sample_relationships.py lims_odoo:/tmp/ +docker exec lims_odoo python3 /tmp/verify_sample_relationships.py +``` + +## Next Steps + +With this foundation in place, Issue #32 (automatic sample generation) can now be implemented by: +1. Reading the `required_sample_type_id` from ordered analyses +2. Grouping analyses by sample type +3. Creating appropriate `stock.lot` records with correct `sample_type_product_id` \ No newline at end of file diff --git a/documents/plans/ISSUE44_PLAN.md b/documents/plans/ISSUE44_PLAN.md index b65373c..370df9e 100644 --- a/documents/plans/ISSUE44_PLAN.md +++ b/documents/plans/ISSUE44_PLAN.md @@ -20,7 +20,7 @@ Establecer una relación entre los productos tipo análisis (tests) y los tipos ### 1. Modificar el modelo ProductTemplate - **Archivo:** `lims_management/models/product.py` - **Tareas:** - - [ ] Agregar campo `required_sample_type_id`: + - [x] Agregar campo `required_sample_type_id`: ```python required_sample_type_id = fields.Many2one( 'product.template', @@ -29,8 +29,8 @@ Establecer una relación entre los productos tipo análisis (tests) y los tipos help="Tipo de muestra/contenedor requerido para realizar este análisis" ) ``` - - [ ] Agregar validación para asegurar que solo se puede asignar a productos con `is_analysis=True` - - [ ] Considerar agregar campo `sample_volume_ml` para indicar volumen requerido + - [x] Agregar validación para asegurar que solo se puede asignar a productos con `is_analysis=True` + - [x] Considerar agregar campo `sample_volume_ml` para indicar volumen requerido ### 2. Actualizar el modelo StockLot - **Archivo:** `lims_management/models/stock_lot.py` diff --git a/verify_sample_relationships.py b/verify_sample_relationships.py new file mode 100644 index 0000000..83afe0a --- /dev/null +++ b/verify_sample_relationships.py @@ -0,0 +1,153 @@ +#!/usr/bin/env python3 +""" +Verification script for test-sample relationships in LIMS +This script checks that the relationships between analyses and sample types +are correctly configured after Issue #44 implementation. +""" + +import odoo +import json +from datetime import datetime + +def verify_sample_relationships(cr): + """Verify that analyses have proper sample type relationships""" + env = odoo.api.Environment(cr, odoo.SUPERUSER_ID, {}) + + print("\n" + "="*60) + print("LIMS TEST-SAMPLE RELATIONSHIPS VERIFICATION") + print("="*60) + print(f"Execution time: {datetime.now()}") + print("="*60 + "\n") + + # 1. Check analyses with sample types + print("1. ANALYSES WITH SAMPLE TYPE REQUIREMENTS:") + print("-" * 60) + + analyses = env['product.template'].search([('is_analysis', '=', True)]) + + if not analyses: + print("WARNING: No analyses found in the system!") + return + + missing_sample_type = [] + + for analysis in analyses: + if analysis.required_sample_type_id: + print(f"✓ {analysis.name}") + print(f" → Sample Type: {analysis.required_sample_type_id.name}") + print(f" → Volume Required: {analysis.sample_volume_ml} ml") + else: + missing_sample_type.append(analysis.name) + print(f"✗ {analysis.name} - NO SAMPLE TYPE ASSIGNED") + + print(f"\nTotal analyses: {len(analyses)}") + print(f"With sample type: {len(analyses) - len(missing_sample_type)}") + print(f"Missing sample type: {len(missing_sample_type)}") + + # 2. Check available sample types + print("\n2. AVAILABLE SAMPLE TYPES:") + print("-" * 60) + + sample_types = env['product.template'].search([('is_sample_type', '=', True)]) + + if not sample_types: + print("WARNING: No sample types found in the system!") + return + + for sample_type in sample_types: + # Count how many analyses use this sample type + usage_count = env['product.template'].search_count([ + ('is_analysis', '=', True), + ('required_sample_type_id', '=', sample_type.id) + ]) + print(f"• {sample_type.name} - Used by {usage_count} analyses") + + print(f"\nTotal sample types: {len(sample_types)}") + + # 3. Check stock.lot samples + print("\n3. LABORATORY SAMPLES (stock.lot):") + print("-" * 60) + + lab_samples = env['stock.lot'].search([('is_lab_sample', '=', True)]) + + if not lab_samples: + print("No laboratory samples found in stock.lot") + return + + sync_issues = [] + + for sample in lab_samples: + has_new_field = bool(sample.sample_type_product_id) + has_legacy_field = bool(sample.container_type) + + print(f"\n{sample.name}:") + print(f" Patient: {sample.patient_id.name if sample.patient_id else 'None'}") + print(f" State: {sample.state}") + + if has_new_field: + print(f" ✓ Sample Type Product: {sample.sample_type_product_id.name}") + else: + print(f" ✗ Sample Type Product: NOT SET") + + if has_legacy_field: + print(f" Legacy Container Type: {sample.container_type}") + + # Check synchronization + if has_new_field and has_legacy_field: + expected_type = _get_expected_container_type(sample.sample_type_product_id.name) + if expected_type != sample.container_type: + sync_issues.append((sample.name, expected_type, sample.container_type)) + + print(f"\nTotal lab samples: {len(lab_samples)}") + print(f"With new sample_type_product_id: {len([s for s in lab_samples if s.sample_type_product_id])}") + print(f"Synchronization issues: {len(sync_issues)}") + + if sync_issues: + print("\nSYNCHRONIZATION ISSUES FOUND:") + for name, expected, actual in sync_issues: + print(f" {name}: Expected '{expected}', got '{actual}'") + + # 4. Summary and recommendations + print("\n" + "="*60) + print("SUMMARY:") + print("="*60) + + if missing_sample_type: + print("\n⚠️ ATTENTION REQUIRED:") + print(f" - {len(missing_sample_type)} analyses need sample type assignment") + print(" - Affected analyses:", ', '.join(missing_sample_type)) + + if sync_issues: + print(f" - {len(sync_issues)} samples have field synchronization issues") + + if not missing_sample_type and not sync_issues: + print("\n✅ All test-sample relationships are properly configured!") + + print("\n" + "="*60) + +def _get_expected_container_type(product_name): + """Map product name to expected legacy container type""" + name_lower = product_name.lower() + if 'suero' in name_lower or 'serum' in name_lower: + return 'serum_tube' + elif 'edta' in name_lower: + return 'edta_tube' + elif 'hisopo' in name_lower or 'swab' in name_lower: + return 'swab' + elif 'orina' in name_lower or 'urine' in name_lower: + return 'urine' + else: + return 'other' + +if __name__ == '__main__': + db_name = 'lims_demo' + try: + registry = odoo.registry(db_name) + with registry.cursor() as cr: + verify_sample_relationships(cr) + except Exception as e: + print(f"ERROR: {str(e)}") + print("\nMake sure:") + print("1. The Odoo instance is running") + print("2. The database 'lims_demo' exists") + print("3. The LIMS module is installed") \ No newline at end of file